YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE29886
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQQIASGST SMAACERENS VDNQPDRASI DDRSSNKNYD EDVESRMIPV DRPSHKGSIR  60
   61 DNTPDSILRL NIGGSSYRIR TRSIIKFGPK TLLGRFVRMN HEHRRQWADW YFEEQDEYFF 120
  121 ERVPRYFDPI YDFYATGKLH VPKDLCFDKF MAELRFWAVS KSRMDECCSP FTQYCVTMGG 180
  181 DPKCTEKDHF IGVRCANIRR RLWLILEGHS QSKWWKAFEI ISTAFVVLSI SALILGSIPE 240
  241 FQVPQKSEDG QLVYATATYP TYPNGGGMTI ESRTVVREGS DNSTGDLMAE ETVPTPRNTG 300
  301 KIEMTEHPVF TWVENVCVIY FSIEYAMRFI VAPRKLAFAR QILNVIDLLS IAPFYFELLL 360
  361 WICGISGENV RKVRWAFLTV RLLRVLRVIR IAKLGRFSPG LANFALTIRK SKKQMQMVGV 420
  421 VMMTVIIFFS TLIYFLERDE PGTKFTSIPA TFWWCVVTMA TVGYGDLVPV TVAGKLVGSG 480
  481 AIVCGVMVLA LPITIMVNNF MQVVKLREEE IVKKYAQGDQ V

Type	Start	End	Confidence
Cytoplasmic	1	216	0.73
Transmembrane Helix	217	238	0.75
Non-Cytoplasmic	239	344	0.72
Transmembrane Helix	345	365	0.58
Cytoplasmic	366	414	0.46
Transmembrane Helix	415	436	0.92
Non-Cytoplasmic	437	444	0.45
Transmembrane Helix	445	468	0.79
Cytoplasmic	469	475	0.33
Transmembrane Helix	476	497	0.91
Non-Cytoplasmic	498	521	0.42