YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	twk-46
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLEMFTMHT KVLNGMEGRM RESNMRILVG LGVAVVYLFV GAIVFVRIEY PLEKIEREAY  60
   61 LDYQNQWRDR LIQLDIDESE IDKLFLNIRE AALNGIWMDR NLTSDPNWTF GQAFFFAGTL 120
  121 ISTVGYGRVS PRTEYGKLFT ILYCVIGIPL TLALLSAIVA RMREPSHKLR GLLNQRLGHL 180
  181 FTVNHIQLIH VGVVFASLLL FVFAIPAWVF SSIETDWSYL DAFYYCFVSL TTIGLGDFEP 240
  241 GDDPNQSFRG LYKIGATVYL MGGLCCMMLF LATLYDIPQF NLTSFFVKSD EEMRFSEEDG 300
  301 KYGTLDSNVV ENGFYSADH

Type	Start	End	Confidence
Cytoplasmic	1	24	0.84
Transmembrane Helix	25	46	0.91
Non-Cytoplasmic	47	107	0.83
Transmembrane Helix	108	129	0.87
Cytoplasmic	130	138	0.72
Transmembrane Helix	139	160	0.94
Non-Cytoplasmic	161	187	0.77
Transmembrane Helix	188	210	0.92
Cytoplasmic	211	219	0.69
Transmembrane Helix	220	238	0.63
Non-Cytoplasmic	239	253	0.51
Transmembrane Helix	254	275	0.91
Cytoplasmic	276	319	0.55