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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ctn-1
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSSNSVVPP FDARNLEIKT KSIEQTLIPL VTQITTLVNY KESYMASGKP KSERAMRAAL  60
   61 KIGSAVEAAI ERFVCVGETI ADENADIQPE MYDACTEARL AGASMANLSC ACNDDPNSVV 120
  121 DKAVLVRASR QLLSSVTRVL LLADRVLVKQ VLRAEDKIAF SLSRLESTRS FNDFVKVFAV 180
  181 FGGEMVELAH RSGDRQHDLK SEKRKAQMSI ARTSLERLTM LLLTASKTYL RHPDCDSALQ 240
  241 CRDGVFYQMK LSLELIAICV CDGILTTEKS RYIQDEPDMP IDIALQLTAN AAIKQLTEML 300
  301 EMIRMTVRVG AGVRERIVSA LDALCQLTQD FTDSAYTPHH QREQILDFLE ECRFEMTNLI 360
  361 QPDENEQLAA SGLEVTVERL NRRLKDLSKQ LQIVAMEQIS EVLRANEDQV LLSSMKACAV 420
  421 SGDIDGVEKY MHKFREHADH MQEVCRLLHH ISITDALHVH TGHVERNMRA LAPLTILAGR 480
  481 TLCVHPSSRI ARENLEVFCD TWGQAVNDLS RVAKESDVAA NGRVAAEKQA YMSLPRPGDQ 540
  541 QKMAKVGLEM KLLTSEVDAE AEKWDEYAEN DIVKRAKAMS SMAYNMYLFT RGDGPLKTTH 600
  601 DLFTQAEFFA EQANQMYRTV REFSYEVPGS AEKSDLSAIL ERIPLHCQQL QVMVKSPTVG 660
  661 KTATFGKVDS VIQETKNLMN EIAKLVTASF VCATKYEIEF RGGSVNGRTG ADGLAPDTKH 720
  721 PTSRAADLFA PFRQQLIKHT HLVVQLRADV ITVPRPPTGS LPFCFSEPYI FFHFFSFFAT 780
  781 FLPLSLSHLS MSYHLPKPRE YSK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle