YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	bre-5
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLCVRILKR KYHELSSFQK LLIFTITIFL LWVLGVVDKF RETSFGDFSW PLETRNLQLR  60
   61 SKFTKYPQCK FSGNGQKIII IIIKSSAKNG PMRESVRKTW GVFRMIDGVE VMPIFIVGRV 120
  121 ENMEIMRRID VESEKYKDIL AISDIDSYRN NTLKLFGAID YAANPNQCSS PDFTFLVDDD 180
  181 YLVHIPNLVK FAKTKQKEEL VYEGFVFDTS PFRLKIHKHS ISLNEYPFSR YPPYVSAGAV 240
  241 FLTSETIARF RNSIRKLKMF PFDDVFTGIL AKTVNVAATH NENFIFWCRR VSQKEWDDGV 300
  301 IAVHGYARKD LEYEYSQLNG FE

Type	Start	End	Confidence
Cytoplasmic	1	20	0.79
Transmembrane Helix	21	36	0.88
Non-Cytoplasmic	37	322	0.94