YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	oat-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.94
Transmembrane Helix	45	69	0.83
Non-Cytoplasmic	70	127	0.89
Transmembrane Helix	128	147	0.75
Cytoplasmic	148	154	0.76
Transmembrane Helix	155	173	0.83
Non-Cytoplasmic	174	179	0.68
Transmembrane Helix	180	201	0.90
Cytoplasmic	202	210	0.88
Transmembrane Helix	211	231	0.90
Non-Cytoplasmic	232	237	0.78
Transmembrane Helix	238	257	0.94
Cytoplasmic	258	327	0.95
Transmembrane Helix	328	350	0.88
Non-Cytoplasmic	351	358	0.89
Transmembrane Helix	359	380	0.85
Cytoplasmic	381	390	0.79
Transmembrane Helix	391	413	0.90
Non-Cytoplasmic	414	418	0.81
Transmembrane Helix	419	440	0.91
Cytoplasmic	441	448	0.85
Transmembrane Helix	449	473	0.75
Non-Cytoplasmic	474	480	0.80
Transmembrane Helix	481	502	0.81
Cytoplasmic	503	526	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKSSTSSE EDENFIKDVE DQKVLEVLTS HSKFKSLDDL VELRWYCMLV LIMAEITAFT  60
   61 ALASVMVMVF AGANPTVVGC DNTVVNGCHE YYSLKNRSGC TPVLEYQFES VQVEFNYICD 120
  121 DAKKVKNTIT IQTFGVLVGA AIFGQVSDNF GRRKALIISC IGNAIFNLIS SYSPSLFYFM 180
  181 LWRTVSGIFA GGLTVVQMVY MVENIPRHHR MWIQNSITWS PNLIIFPYIA YLAQNWRTLS 240
  241 VVISATSVLS FLALMLLEES PRWLVQKGKL EEARRLLIKI RKTDGLYTSD FEKDLDEVLK 300
  301 IEAEKQVISS KKSKKYTFIH LFCTWKMIAQ TMTFIVGIIC TNFIVYALLY NMEKLSGSLY 360
  361 WNSAIIGAAR WVVNIVVSIA DYQLPWFGRR LINHISMIFT LASLAIVAGY VYIGNGGYVV 420
  421 AIGTTVALAM CSQLFIAKYL MVNELYPTAV RNLAVSAVST MSRVGGMFSP QLFYLSDIAE 480
  481 WIPYAVLVGF QLVDLVLFCI TIPETKGVHL ENHLPPEHKR IFGKRS