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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: cup-5
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRRSTTDRS DFNDNASNAS SNASRRPTIN FQEIMEDLPH HERETGERLR RHLQFFFMNP  60
   61 MEKWKVRHQL PYKLVLQVLK IVFVTMQLIL FAEMRMSHVD FLEDTTTVMR HRFLKEWNDD 120
  121 RDALQYPPAE GRYSVYDDQG LSEHLSFLIN SYYSIRNDSF ASFSYDVVSH PSGNLGAQIS 180
  181 FESIPPIEVL IDRISNVTVN NNTYNFDIRE VKDTKRLNLT ETEVFQIGQS DDAVRDILAT 240
  241 RGITFLPEDA LKISTVQFKF RLRTIHYSPT AGDQKPECYK ISVSIKFDNS RHTGQVHVTL 300
  301 STVVSYVNVC NGRIIKGVGW SFDTLLIGGT DIFVLILCIL SLILCCRALI KAHLLQIKTS 360
  361 DYFENVLKNK ITVTDQLDFL NLWYVMIVVN DALIIIGTVA KISIEFQFNK NTFTTRNDFD 420
  421 NSLFTLTSIF LGMGALLVYV GVLRYFGFFS QYNILMLTLK RSAPNIMRFM TCAIVLYAGF 480
  481 LIAGWVIIGP YSMKFRTLAE SSEALFSLLN GDDMFATFYT INDSNTVIKV FGTVYIYLFV 540
  541 SLFIYVVLSL FIAIIMDAYE VVKDRYSDGL RAIEKRGCLR DFVESNPPPS ELGSPTTRSA 600
  601 YAPSNLLNLG RCVPVEVTRI FLCSGFLHTF SFFLHLCTPN KLGC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle