YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE30296
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.93
Transmembrane Helix	43	63	0.83
Non-Cytoplasmic	64	97	0.93
Transmembrane Helix	98	121	0.91
Cytoplasmic	122	130	0.89
Transmembrane Helix	131	151	0.95
Non-Cytoplasmic	152	157	0.82
Transmembrane Helix	158	180	0.90
Cytoplasmic	181	193	0.83
Transmembrane Helix	194	215	0.87
Non-Cytoplasmic	216	220	0.81
Transmembrane Helix	221	243	0.91
Cytoplasmic	244	307	0.98
Transmembrane Helix	308	332	0.83
Non-Cytoplasmic	333	343	0.93
Transmembrane Helix	344	365	0.94
Cytoplasmic	366	374	0.91
Transmembrane Helix	375	397	0.90
Non-Cytoplasmic	398	408	0.72
Transmembrane Helix	409	430	0.91
Cytoplasmic	431	442	0.83
Transmembrane Helix	443	463	0.88
Non-Cytoplasmic	464	471	0.66
Transmembrane Helix	472	492	0.92
Cytoplasmic	493	516	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAVVASQNK NDRSFSNMES ESSSNVEKSE KENHHQSLPD ENWTPFLFFC ISSIALASFQ  60
   61 DGFQIGCINA PGPLIIDWIK KCHFELFGEV LSQYQADFIW SVAVSMFSVG GMFGSFCSGF 120
  121 LADKFGRKST LLYNNILALL AAVCLSTSKL FNFYPMIVFG RFLVGLNCGI TSGLVPMFLT 180
  181 ELAPANLRGK CGSFHQLNIS VAIVLSQALG LPQIFGTQVG WPYIFACVAI PTFLQLATIP 240
  241 FCVESPKYLI SKLNDREEAR RILEKLRGHT KVDEELEHMV QETMVTVEPL HQPGYVSLFK 300
  301 GDNQWPMIVS ILMMFSQQFS GISAVTFYST LIFKRNGLSG NEPMYATVGF GCIKLIATFG 360
  361 CLFLIDHPKF GRKRLHIAGL SGMCISSILI VITLTLSNAG YHWASYMNVL FILSFVVTFA 420
  421 FGPGPIPWFF TSELFDSATR GRAAAVSATS NWVANWMVGL TFLPINNIIH QYAFLMFTFF 480
  481 TFTFAIFTWK FVPETKGKSP SAIRKELAFM RKRICS