YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE30094
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.93
Transmembrane Helix	10	30	0.94
Non-Cytoplasmic	31	66	0.94
Transmembrane Helix	67	88	0.93
Cytoplasmic	89	93	0.93
Transmembrane Helix	94	114	0.94
Non-Cytoplasmic	115	121	0.77
Transmembrane Helix	122	144	0.89
Cytoplasmic	145	153	0.77
Transmembrane Helix	154	177	0.88
Non-Cytoplasmic	178	185	0.84
Transmembrane Helix	186	205	0.96
Cytoplasmic	206	247	0.95
Transmembrane Helix	248	269	0.90
Non-Cytoplasmic	270	278	0.85
Transmembrane Helix	279	302	0.84
Cytoplasmic	303	317	0.92
Transmembrane Helix	318	340	0.92
Non-Cytoplasmic	341	345	0.80
Transmembrane Helix	346	366	0.92
Cytoplasmic	367	383	0.79
Transmembrane Helix	384	403	0.88
Non-Cytoplasmic	404	411	0.82
Transmembrane Helix	412	434	0.92
Cytoplasmic	435	460	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIISNKYRV LVVFIGFLCL VSVCSNYVVM NFTFICMKND MSFTRDDRGN ETSPVSLFDY  60
   61 TPNEKKYIMW AVAAGTIIGT FPVNYVFVRF GGRWTFFLAG VISVIATTLI PLAAQTSFHA 120
  121 LLAARFCQGL AFAADFAAIG LLTVRWAPLS ETAIFLGALT SFTNFSSVLT NAVSGAICEG 180
  181 FGWRTAFYAH AVMGSVFFIL WAIVYNDDPE KKVSADELRK IRKNKSEQHL KTKNVEVPYR 240
  241 KLLTSPIVLC VWLNAFAEMS IIVFLHTYAP IFFNRILKFS VAQTGFLLAL SVFIPLPLKL 300
  301 VGGIISDKAK CFSERGKMLF FNTISVGLVG VLLGCLGFIP QSLHYVSVVL FSVIFSCLCL 360
  361 NVAGFYKCAT LHTRQFAHVV ISTIQWMKSV ALITGPALVA AIVKNEESVG QWRTVLCILG 420
  421 GIMFVANILA LCVFTDKPAE YTMADANEKT VKYEVNAEEP