YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE30441
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.95
Transmembrane Helix	11	33	0.88
Non-Cytoplasmic	34	60	0.94
Transmembrane Helix	61	81	0.94
Cytoplasmic	82	88	0.94
Transmembrane Helix	89	110	0.95
Non-Cytoplasmic	111	119	0.74
Transmembrane Helix	120	140	0.93
Cytoplasmic	141	147	0.80
Transmembrane Helix	148	169	0.91
Non-Cytoplasmic	170	180	0.91
Transmembrane Helix	181	200	0.96
Cytoplasmic	201	243	0.93
Transmembrane Helix	244	261	0.67
Non-Cytoplasmic	262	276	0.58
Transmembrane Helix	277	292	0.61
Cytoplasmic	293	313	0.76
Transmembrane Helix	314	333	0.97
Non-Cytoplasmic	334	339	0.83
Transmembrane Helix	340	362	0.90
Cytoplasmic	363	379	0.84
Transmembrane Helix	380	399	0.90
Non-Cytoplasmic	400	407	0.73
Transmembrane Helix	408	427	0.95
Cytoplasmic	428	458	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIQFAEKNK FSGTLCIASI ASNMTVINFT MICMAKPSEL VPTTDQEGTI NFSYSNEQKS  60
   61 VIMWAAAVGT LAAAWPFHWF YEKFGARRVF FAAGAFSTIS TALMPLAAHI HFNFLVVARF 120
  121 FQGVSFGADF AAIGLIVVNW ASLKQHGLFI SLLSSFSQIS VMFTMPVAGE LCESKYGWES 180
  181 VYYGHAAVSG ALFVLWAWFY RDNPSKHPQM TETELEKIRR GKGEVKEHEK APIAKILTNP 240
  241 VMQSVWLSAF GELMMSQFIV MYEPTFLKEV LGFTVNHTGY FVAIPRALHL TFKIISGIAS 300
  301 DRISFWTEKS KMRIFNTIAL MGSGTFFCVL GYIPKEHAHL SLVALIIIEC STGFICGGFY 360
  361 KCATLVARQH SHFVLSQIQF IKCLSLFIEP LLVFLICTSN TLEEWRIVFL THGILLIAGN 420
  421 IIFCYFATDR PADFTHTLVE EELPEFLLER ERLTEHKA