YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	fmo-4
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.72
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVCVVGAGA SGLPAIKACI EEGLDVVCFE KTADIGGLWN YRPGQKDIGG TVMESTVVNT  60
   61 SKEMMAYSDF PPPAEFANFM HHTKVIEYIK SYAEHFGLMD KIRFNTPVKR ISRNEQNKYI 120
  121 VSLQNGEIEE FEKLILCTGH HAEPSYPELK NLDNFKGKVV HAYDYTNTSG YEGKDVFLLG 180
  181 IGNSALDIAV DIAKIAKSVT ISTRRGTWIF NRVSQGGMPY DVQLFSRYYD TLLKTIPHAV 240
  241 ANDFMEYRLQ QRMDHDVYGL RPDHRFFQQH PTVNDALANL LCAGYITITE DIDTFTENSV 300
  301 IVKGGREFKC DIFLTCTGYT FGFPFVDSDI VEIKNQQVPL YKYVFPPNSD SVAVIGLIQP 360
  361 IGSIAPISEI QSRWAARVFA GRCQLPSSQE QIDDIQKKKA AMKKRYFDSI KHTIQVDYMS 420
  421 YMDEIAEIIG CLPPMKHYLF FYPRFWMKLF MGANVPYAYR LVGPHAWEGA EQAIWTVSER 480
  481 VKKPLKNRQC RIRKHKKRGS TDEYFRYATQ KVIATNISIL FCSGLLLYCS TTSTLPPAVY 540
  541 FFSFFLFFTL YGATLMWFDL QYDMTTIF

Type	Start	End	Confidence
Signal Peptide	1	18	0.72
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	511	0.90
Transmembrane Helix	512	531	0.79
Cytoplasmic	532	537	0.62
Transmembrane Helix	538	558	0.93
Non-Cytoplasmic	559	568	0.64