YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE30142
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKNYHLLTF FFSGSPMFSS PCHLSCASVF SLIGLGLVCF AVTTDNWVEV QVNRREIINS  60
   61 FKREPELSLR LQNAFGHNNI YFSRNYGLFN LCFPDTVPQD VGSFSKMGSP CIWSNEFMVP 120
  121 ESKKEHFSNN ELYRHYAAKA TIIAYVVGIV FVVLSFIVGL IGCWNRSKKF IMSTGILLIL 180
  181 AGLSMSVAML LWHYVAYSER YTLDVEPYYK SWEPILKLTS RHNYGWSYIV SWIGIGFIVI 240
  241 GSAFMFFAYA AVKREEEDAL TAKHGAYMMP NYYDKGAGTI VPYNYNTYAG YGGYPYYNQY 300
  301 NTAGYGYMTY GLILFLFHLP TKNCCRFVYV CIAFVTVSP

Type	Start	End	Confidence
Cytoplasmic	1	20	0.72
Transmembrane Helix	21	42	0.79
Non-Cytoplasmic	43	141	0.91
Transmembrane Helix	142	164	0.93
Cytoplasmic	165	173	0.74
Transmembrane Helix	174	195	0.92
Non-Cytoplasmic	196	227	0.91
Transmembrane Helix	228	250	0.91
Cytoplasmic	251	339	0.84