YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	acl-4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAIIEDEVT SRFEAEQLVS WNMLTRTSIK FYQFVNWKLS ALWILGFMFR YCVMLPLRFT  60
   61 VFCIGLVFLI SSTALIGLVP IGNWKKALNH KCMLICYRIL SRSLTAVVYF HDEHYKAQAQ 120
  121 GICVANHTSP IDALILSIDN VYALIGQKHE GLLGIVQRAL SRASSHIWFE RSEAKDRLVV 180
  181 AQKLKEHCTN PDKLPILIFP EGTCINNTSV MMFKKGSFEI GTTIYPIAMK YDSRFGDAFW 240
  241 NSSEQSWCGY IMRMMTSWAI ICNVWYLPPM TRRDGEDAVD FANRVKKEIA NKGGLVDLEW 300
  301 DGGLKRAKVP PKMVAKQQER YANRLSRYTS VSEVVKDEDV DVTSDSSSDL VDKPVSGYNS 360
  361 LEDLPEDVFI DEEEDETIDA HDENENDDPA GESNILPNKP LSDTVSLVKT

Type	Start	End	Confidence
Cytoplasmic	1	33	0.89
Transmembrane Helix	34	53	0.85
Non-Cytoplasmic	54	60	0.60
Transmembrane Helix	61	82	0.91
Cytoplasmic	83	410	0.64