YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-12
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCASEIQAE IFTSFGQLFY ASFQTILFLA TIIGSLLAIF ELCKKTTVPD STRVLLIGSL  60
   61 FFANAHEFAY FTAPLKVFQL NIFNTNTSCY PLISTRDCIP TTTVLAMGIS GNMLIQSALS 120
  121 IDRLLATIFP FSYSRMRALP GFVLLIMVLI PAMFTYSWIR LDIVLDDYQM FCSQWSANIS 180
  181 TRANTFLEIC SYLTVAHIII NCLIILRNRA IEKRCRFDVT QRYLTSENLK TTQAICYLSI 240
  241 AQFLAMFMYS GGVLLMRKNR ENIPTLIYFN VIVWVYAPPY ACVSLAPLIL FSLWNLKKQR 300
  301 HIQIKSVQSA QKETQDDYIR KLQKSWK

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.93
Transmembrane Helix	20	40	0.94
Cytoplasmic	41	51	0.81
Transmembrane Helix	52	73	0.83
Non-Cytoplasmic	74	98	0.88
Transmembrane Helix	99	121	0.75
Cytoplasmic	122	137	0.80
Transmembrane Helix	138	159	0.90
Non-Cytoplasmic	160	184	0.94
Transmembrane Helix	185	206	0.89
Cytoplasmic	207	233	0.88
Transmembrane Helix	234	255	0.86
Non-Cytoplasmic	256	273	0.88
Transmembrane Helix	274	296	0.90
Cytoplasmic	297	327	0.98