YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE30532
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	43	0.87
Non-Cytoplasmic	44	67	0.81
Transmembrane Helix	68	85	0.93
Cytoplasmic	86	90	0.73
Transmembrane Helix	91	110	0.86
Non-Cytoplasmic	111	124	0.81
Transmembrane Helix	125	142	0.93
Cytoplasmic	143	152	0.76
Transmembrane Helix	153	176	0.88
Non-Cytoplasmic	177	182	0.72
Transmembrane Helix	183	205	0.89
Cytoplasmic	206	220	0.89
Transmembrane Helix	221	245	0.79
Non-Cytoplasmic	246	256	0.71
Transmembrane Helix	257	277	0.93
Cytoplasmic	278	287	0.86
Transmembrane Helix	288	311	0.82
Non-Cytoplasmic	312	345	0.54
Transmembrane Helix	346	366	0.90
Cytoplasmic	367	375	0.52
Transmembrane Helix	376	399	0.89
Non-Cytoplasmic	400	406	0.52
Transmembrane Helix	407	431	0.71
Cytoplasmic	432	442	0.46
Transmembrane Helix	443	463	0.76
Non-Cytoplasmic	464	558	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTNLWPGAK TKVVEFFNNN HVNQIVTFFI IVSGIYVTMV SITGQNFLHP LSPVTSNSLN  60
   61 LQNAANEVLH SIISCFMMVV LAVAAGKLVK FIYTPSLIGC MLVGIAMRNV PQFGELFYIN 120
  121 EYWQFILRKL SLVVIIIRWG ISINVRFIKK NYIFPPILGL GSAFSEALAI CFTACVFFDF 180
  181 PLSLGLICGF VVATVSPAVG MPTMIRLKEQ GIGTTNNIPD VVPAACCFDN VVSLLIFSVT 240
  241 SSVTFTHDAF FLTMVKSIGA IVLAAIIGCV IGWLLRWFPK NDNRHTHFAR FLVIASPAYA 300
  301 VITSMLILGY AFPGIVSALC ICCVSTTHWR EDNPKGIKVL VHQFDNLWYF VAVPLLFSLV 360
  361 GYTFDFQNMS AENWKTAFII IAVGSSFRLI SAMILSYYGH FNIYEQIILA LTLMPKATVQ 420
  421 CALAPSLIFM TNGFPELREQ TKLIINICIT AVMVTSPIVE ILLDVLAPRI LKIKEGTSTY 480
  481 NRNITNSTIL DEMDPNLELK KTSSSNSTNN SRTNLNNRII YELNPNFVPI SIENGYSRAS 540
  541 YQHSNNTKTY ASGNRINK