YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE30529
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRPTTTTSS SSSYTPWYHH IFIIFLQYSL FHISPTFGAR NTVTEGGQPL TELLSSLDQP  60
   61 YPCGHVVEAE HFLSTAVALK FPRLIQLAHF FANHSKNFDP QLLDKSSFQQ IPPFDVSFAR 120
  121 RTHFYGLQLN CTGNNHRWLP RLVFVSHDPN NSNKKAYLTL QLDQFDVDMC SAVNCHTKCT 180
  181 WTVHGGLRVS AKACCNSDDV ILCRTDAERG RHMLLAFNSI CALICIALIP IVCYQRKRQH 240
  241 EARGWALMEL FLIGASILYS VLFLDFVAPP EYGCCVAVWL RQIGFSIFYG SIVLKIYRNL 300
  301 QEYRVRKAQH VSVREQDMLK YLAAMLALTI TGLMAWTVGS WGDTALWRTA WPQCLMQGWH 360
  361 VIWHGYELLF LLYAVRLCYK ARNSDWLERW QFTVAVCLEA VITLMANLIR YSIRNSGRAD 420
  421 TLFIVSFVHL QLTVSVNIVI IVAPKFYLSN GEPSRRSMTL GGHSGRAHPS LAKLRDNILN 480
  481 GTIDFAEVPI ADMNPEDIRA ELKRVYTQLR MYKLKNLYQD NPHISKKRGG KKWSDKNTKA 540
  541 TRRISIPSCS PQTKRIEEDE KSDLTVESSP HNIYLSNFKG VNVNSIEQHN SVRV

Type	Start	End	Confidence
Cytoplasmic	1	15	0.61
Transmembrane Helix	16	33	0.59
Non-Cytoplasmic	34	213	0.97
Transmembrane Helix	214	234	0.95
Cytoplasmic	235	244	0.90
Transmembrane Helix	245	267	0.89
Non-Cytoplasmic	268	277	0.83
Transmembrane Helix	278	297	0.96
Cytoplasmic	298	317	0.95
Transmembrane Helix	318	339	0.94
Non-Cytoplasmic	340	359	0.90
Transmembrane Helix	360	379	0.91
Cytoplasmic	380	389	0.90
Transmembrane Helix	390	411	0.89
Non-Cytoplasmic	412	426	0.83
Transmembrane Helix	427	448	0.89
Cytoplasmic	449	594	0.92