YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE29782
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.92
Transmembrane Helix	10	28	0.85
Non-Cytoplasmic	29	49	0.85
Transmembrane Helix	50	70	0.90
Cytoplasmic	71	77	0.62
Transmembrane Helix	78	97	0.83
Non-Cytoplasmic	98	101	0.87
Transmembrane Helix	102	122	0.91
Cytoplasmic	123	139	0.91
Transmembrane Helix	140	161	0.91
Non-Cytoplasmic	162	176	0.94
Transmembrane Helix	177	198	0.93
Cytoplasmic	199	224	0.87
Transmembrane Helix	225	245	0.84
Non-Cytoplasmic	246	264	0.90
Transmembrane Helix	265	287	0.93
Cytoplasmic	288	297	0.87
Transmembrane Helix	298	318	0.96
Non-Cytoplasmic	319	336	0.91
Transmembrane Helix	337	359	0.87
Cytoplasmic	360	373	0.88
Transmembrane Helix	374	392	0.93
Non-Cytoplasmic	393	400	0.63
Transmembrane Helix	401	423	0.88
Cytoplasmic	424	470	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLLDTGTKN VIRLSVSFML LFFAYMSQEF IQEPLIEEEH RRGGNIDPHA GYHSFAILYF  60
   61 FFTIACLLIA PVVDLITAKW SMVVGFFTYI AFQLGFLELN SAYLYTTSAL LGIGAAFLWV 120
  121 GQGKYLTENC TSETIERNTA LMWLIFKFSL LGGGVFLYFM FQDQTMHELV LSGDFKIFVY 180
  181 VFCSISVVAA VNTAFLPAPA YVPEKREAVT LAGTLKVTFR LIRQTPMLLL AFIFLYTGFS 240
  241 RSFWIAIYPT CIKFTSKLGE NTTKLLAISG IATGIGQIVA GGIFSVLGKR VRILGKDMIV 300
  301 VIACVLHLIC FVLIYLFFPY DAPLRPTQNV GIFEPNAYIA IFCSGLLGFG DAIIQTQVYS 360
  361 FLCDGYSEES SHAFALFKFY SAISSTIAFF VSKYFTLAGH LLLYGAFAIL SAIAAVMAQK 420
  421 LYFHKTRHFF QENTKIHPAI ESEPIKIQIS ESGSTIESSE KTERKITDLN