YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE30517
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIFHSNYFQ AMFQWMINLL FNEKFVLFGI FVSILLTPVI GLECAKKKKK ESKKRKKTQK  60
   61 EEDCDSESIK QKKKKARVKK KEVRKSKKDV EDDEDDSNSK SAKKKAVKVA KVYNKGVCNP 120
  121 TFQIKSSVCN IRLTIILQTC TKSTDMQSIN ILFAMLLILA PIVNGDDTAV AVTATEVTED 180
  181 ATEVTEDATV AHIETTAEAV AEAEPATEPV QTTEAVEETT QAVVVESTQE TVNAETNTPV 240
  241 DTPATNNVEA TTEAASRPSL SSTVASNMTS ADDLLGETST NATKAAYNTG TFIVVPMVVL 300
  301 ALIQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.88
Transmembrane Helix	21	45	0.81
Cytoplasmic	46	304	0.80