YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE30273
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.67
Transmembrane Helix	34	54	0.64
Cytoplasmic	55	62	0.88
Transmembrane Helix	63	85	0.91
Non-Cytoplasmic	86	92	0.82
Transmembrane Helix	93	117	0.86
Cytoplasmic	118	125	0.82
Transmembrane Helix	126	147	0.89
Non-Cytoplasmic	148	155	0.77
Transmembrane Helix	156	176	0.93
Cytoplasmic	177	217	0.96
Transmembrane Helix	218	242	0.89
Non-Cytoplasmic	243	260	0.88
Transmembrane Helix	261	282	0.88
Cytoplasmic	283	297	0.84
Transmembrane Helix	298	317	0.93
Non-Cytoplasmic	318	323	0.81
Transmembrane Helix	324	347	0.67
Cytoplasmic	348	360	0.57
Transmembrane Helix	361	382	0.76
Non-Cytoplasmic	383	390	0.62
Transmembrane Helix	391	411	0.93
Cytoplasmic	412	488	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTCFGMAMV DIVRSGNGTF HPDLHMEWSG DEQANIHTSF YIGAFIAVFP SEFLAKKLGP  60
   61 KNLLSFALLL NIFGSLLTPF SAIYLRSYFP VAAIRLIMGF GYGFVIPAGS VLISSWFPLS 120
  121 EKSTAMAIFT TGNQIGIAVS MFLTAKLCQL HFFEGWPLVF IVYGLIGAVF LVIWHVRLAD 180
  181 KPRESKYITA TELTYIKGGK QRRNRAETIV RATPYMKIIL NGCVCAICAC SFAQSFVLVA 240
  241 LVTYLPKYNQ IAFKMNLTHN GIWSSLPFFI QMITKLLFAI IADKVKQRKV NATAVTKVSN 300
  301 AIASFASAIF IVIAAYGPFD SAELVQLSII VSMAAFSAYV PGYNTSIVTV APQFTAFISS 360
  361 YAQLYAQIAS TLAPIVIGRI TSHGTIYEWK CAFYSLAGVL AVTGLIFQIF GHGRTEPWGE 420
  421 TPSNATSARL STSVTMCEDG MCKLTLLEKH NHEFRTESKI SSGSGNLKKK VRCPRGVHDF 480
  481 AKFIFTKI