YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE30512
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.90
Transmembrane Helix	29	52	0.85
Non-Cytoplasmic	53	75	0.90
Transmembrane Helix	76	97	0.86
Cytoplasmic	98	104	0.92
Transmembrane Helix	105	127	0.91
Non-Cytoplasmic	128	134	0.83
Transmembrane Helix	135	159	0.86
Cytoplasmic	160	167	0.83
Transmembrane Helix	168	189	0.89
Non-Cytoplasmic	190	197	0.77
Transmembrane Helix	198	218	0.93
Cytoplasmic	219	259	0.96
Transmembrane Helix	260	284	0.89
Non-Cytoplasmic	285	302	0.88
Transmembrane Helix	303	324	0.88
Cytoplasmic	325	339	0.84
Transmembrane Helix	340	359	0.93
Non-Cytoplasmic	360	365	0.81
Transmembrane Helix	366	389	0.67
Cytoplasmic	390	402	0.57
Transmembrane Helix	403	424	0.76
Non-Cytoplasmic	425	432	0.62
Transmembrane Helix	433	453	0.93
Cytoplasmic	454	546	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSSTYNSVR SLPSPIPPLW TLQSIRFQTA LLISAACVVF GLMRTCFGMA MVDIVRSGNG  60
   61 TFHPDLHMEW SGDEQANIHT SFYIGAFIAV FPSEFLAKKL GPKNLLSFAL LLNIFGSLLT 120
  121 PFSAIYLRSY FPVAAIRLIM GFGYGFVIPA GSVLISSWFP LSEKSTAMAI FTTGNQIGIA 180
  181 VSMFLTAKLC QLHFFEGWPL VFIVYGLIGA VFLVIWHVRL ADKPRESKYI TATELTYIKG 240
  241 GKQRRNRAET IVRATPYMKI ILNGCVCAIC ACSFAQSFVL VALVTYLPKY NQIAFKMNLT 300
  301 HNGIWSSLPF FIQMITKLLF AIIADKVKQR KVNATAVTKV SNAIASFASA IFIVIAAYGP 360
  361 FDSAELVQLS IIVSMAAFSA YVPGYNTSIV TVAPQFTAFI SSYAQLYAQI ASTLAPIVIG 420
  421 RITSHGTIYE WKCAFYSLAG VLAVTGLIFQ IFGHGRTEPW GETPSNATSA RLSTSVTMCE 480
  481 DGMCKLTLLE KHNHEFRTES KISSGSGNLK KKVSRVSYAG EEIVIPGRIE DLENDVIYSI 540
  541 EEERED