YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE30073
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIKDDHDDA GSQSEDNGVP IYDSLESLLF IPRSMSKELS ETALRTQFLL DKWSNNRRKI  60
   61 VRQMEGIAEK LDNWEKGCAI STAVGSTVGI ASGIAVIGGL ILMPPVAIAG LIVGTASGVS 120
  121 NLATGITKFF HTKGQHKEVA AMIAEDGVLF EELLKSREEL MEAVRKIVED EEFFKHFKND 180
  181 GDIENKLKTV FGGSVTGITG IGTRFAITSM GRLSSSLVKG VLHSVAVIGI VLDSVTLALS 240
  241 AKTLGEGSVS ELGSSILEAS SKMEMMRQKV VKHFLNEDVW KDDDDVLSDV GSIEMVQPES 300
  301 PNQSLIMDPH QQESSVQH

Type	Start	End	Confidence
Cytoplasmic	1	77	0.98
Transmembrane Helix	78	101	0.87
Non-Cytoplasmic	102	106	0.70
Transmembrane Helix	107	127	0.88
Cytoplasmic	128	189	0.90
Transmembrane Helix	190	208	0.46
Non-Cytoplasmic	209	219	0.39
Transmembrane Helix	220	240	0.63
Cytoplasmic	241	318	0.56