YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE29956
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIYESLKST LMNGEEMPKE LQVKAWGAQW HLDRWSSNRQ EIMNRMEEIA KDLDGLEKAS  60
   61 AIATTVGSSV DIASGLAVFG GLFFMPPVAI AGLIVGAASG VSNVATGVNK KLATDHKIRE 120
  121 INRMLAEDAK FFEELLHSRN DLLNEVRRFV EDKQSSKIFK NFDDVQSHLK TLFGVSLAGI 180
  181 TGFGIKMAAS SMGHLTNALM KGMLQSVAAI GIVLDGVTLA MSANTLKNGS SSELAGKIRE 240
  241 ASGKMERMRH NVVTNFLNYD AWNSD

Type	Start	End	Confidence
Cytoplasmic	1	60	0.87
Transmembrane Helix	61	83	0.67
Non-Cytoplasmic	84	87	0.50
Transmembrane Helix	88	109	0.74
Cytoplasmic	110	168	0.71
Transmembrane Helix	169	190	0.81
Non-Cytoplasmic	191	201	0.56
Transmembrane Helix	202	223	0.80
Cytoplasmic	224	265	0.69