YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-14
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKRARLRLI LLAKLVSLKM SDEKEKRSLR PVAFVAVVFS TVAITSCLIT FPLILHYIQT  60
   61 LESQVQLDLE FCQARARDMW KEMLDIETGG KKDSAKLANI VLNHRRLEKR DTLQDFWARR 120
  121 LHDQELRDQP VGYDNPSVGV ESFNSEGGGC CTCHRGPPGP AGDGGRDGAD GVDGTPGEIG 180
  181 PPGPPAPPGP DPHSLFPPQC PCEAPPGDGG PPGQPGPDGP PGAPGNAGED GKPGDQGPRG 240
  241 PPGIPGAPGQ PGRPGPPGEP GTYKTEVGPA GRAGAPGRPG PPGQPGPAGP PGENGKGGGQ 300
  301 GPSGLPGPPG QPGQNGAPGE VGQPGDNGAP GSCDHCPPAR LAPGY

Type	Start	End	Confidence
Cytoplasmic	1	32	0.90
Transmembrane Helix	33	56	0.86
Non-Cytoplasmic	57	345	0.99