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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: noah-1
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.97
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVFAVLALV VASVLADTLP SVTLCPPETQ TIFVLQHNTT VGARIRTIPT SNLAECSDHC  60
   61 SASLDCQGVE FKDGSCAVFR AGSEKATAGS QLLTKTCVKS DRVCQSPFQF DLFEQRILVG 120
  121 FAREVVPAAN IQICMAACLN AFDTFGFECE SAMFYPVDQE CILNTEDRLD RPSLFVEESD 180
  181 DTVIYMDNNC AGFPLVFKNY NYQKTTFSKS QCYPPYITQY IAVEGKQLKN ELDRIINVDL 240
  241 DSCQALCTQR LSISSNDFNC KSFMYNNKTR TCILADERSK PLGRADLIAT EGFTYFEKKC 300
  301 FASPNTCRNV PSFKRVPQMI LVGFAAFVME NVPSVTMCLD QCTNPPPETG DGFVCKSVMY 360
  361 YYNEQECILN SETRESKPEL FIPEGEEFLV DYFDITCHLK QEKCPTGQHL KAIRTINAAL 420
  421 PEGESELHVL KASAAKGIKE CVAKCFGLAP EKCRSFNYDK KTKSCDLLYL DGHNTLQPQV 480
  481 RQGVDLYDLH CLAVENDCSA NKDDALFSRY LHTKQRGIPA KVYKVVSLNS CLEVCAGNPT 540
  541 CAGANYNRRL GDCTLFDAID DDAEINEHTD FYKNLCVTKE IDTGASAAAN VPETKHRVSG 600
  601 TVVEGKDSKS QLLATKKVKK PTIKNTEHRR APESTVPIGP PVEVKAEAIQ TICNYEGIKV 660
  661 QINNGEPFSG VIFVKNKFDT CRVEVANSNA ATLVLGLPKD FGMRPISLDN IDDNETGKNK 720
  721 TKKGEETPLK DEIEEFRQKR QAAEFRDCGL VDLLNGTYKS TVVIQTNNLG IPGLVTSMDQ 780
  781 LYEVSCDYSS MLGGRVQAGY NMTVTGPEAN LIQPRGKIEL GNPVLMQLLN GDGTEQPLVQ 840
  841 AKLGDILELR WEIMAMDDEL DFFVKNCHAE PGVAGGKAGA GEKLRLIDGG CPTPAVAQKL 900
  901 IPGAIEIKSS AVKTTKMQAF RFDSSASIRV TCEVEICKGD CEPVECALTG GVKKSFGRKK 960
  961 REVSNNIEEF ETNRYLIPRR SHATTSIVII DPLQQVNEPV AMSRASTLDL LREDAHEVQM1020
 1021 IEEGSICLNS VTVFAIFGTL AVLILGQTVV IAHYAVRRFS SEKTA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle