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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gar-1
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNYTVPPDP ADTSWDSPYS IPVQIVVWII IIVLSLETII GNAMVVMAYR IERNISKQVS  60
   61 NRYIVSLAIS DLIIGIEGFP FFTVYVLNGD RWPLGWVACQ TWLFLDYTLC LVSILTVLLI 120
  121 TADRYLSVCH TAKYLKWQSP TKTQLLIVMS WLLPAIIFGI MIYGWQAMTG QSTSMSGAEC 180
  181 SAPFLSNPYV NMGMYVAYYW TTLVAMLILY KGIHQAAKNL EKKAKAKERR HIALILSQRL 240
  241 GTQVGVSLML QSKAEKEKAE EAQKDSGYTS NQAGDANNLR RFGFSEPETS QFRVDPNSNN 300
  301 NLNVEGSLNT ENDQNLGVIE EERSGFLSRR ESNESYYPGP HPTAANSRRC SEMEKVSLLS 360
  361 ESDGVPSTRP AKSYGRLSLR SRYSASESIT TTHENDEKEV EKADSLQKLF ADDELGSVLN 420
  421 FKEEKLKNTD SNNDSDTTSV ILQRSRKYKK NKRPRSSRRS EHSTPRQIAK VKQAEGTAAQ 480
  481 LIEESVPDDD QTETIEVKRT DRWVVSMKKR IARALIRRRS TTRPERGSSS NSDDSSSEVE 540
  541 GEEKPEVRNN GLKIPQLTVN NENRGETSSQ PGRDRLAPPN KTDTFLSASG VSRKISTIST 600
  601 VITREKVISS IFAPIAVFNR GRKQTKAEKR AHKAFRTITF IVGFFAILWS PYYIMATVYG 660
  661 FCKGECIPSF LYTLSYYMCY LNSSGNPFAY ALANRQFRSA FMRMFRGNFN KVA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle