YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sfxn-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFDPDQPRY DQSTFYGRLR HFAGMTDPLI AFSSTTELIT ASELMQKCRE KKPVPATLEE  60
   61 LHRSQRLCQS AFHPDTGELQ NFAGRMCFNV WGGTMLCGAM MIWYKSTPAV IFWQWANQSF 120
  121 NALVNYTNRN AKSTLTTKDL VVSYSTAVSG ALAMAIGLKT YFAKKQSSPL AQRLVPLGAV 180
  181 AVANAINIPM MRQNELKEGM TVTDADGNNV GVSRLAAAKA ISLVVLSRNI IVAPCMILTP 240
  241 VIMEGLNKVA SFRKHINKLN IPTQLALTFV IYGAMIPVGC ALFPQQNSVK LSTLKRWEPE 300
  301 AFEKLKNIKG DRVYFNKGL

Type	Start	End	Confidence
Cytoplasmic	1	86	0.95
Transmembrane Helix	87	107	0.87
Non-Cytoplasmic	108	140	0.91
Transmembrane Helix	141	163	0.88
Cytoplasmic	164	173	0.77
Transmembrane Helix	174	191	0.65
Non-Cytoplasmic	192	223	0.60
Transmembrane Helix	224	243	0.75
Cytoplasmic	244	260	0.62
Transmembrane Helix	261	283	0.84
Non-Cytoplasmic	284	319	0.71