YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lite-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPPSSHSNI FHSTFKHTVK ETMANAKKTM IAKILSSRNK WAICDRTLYP IYYLLLILGL  60
   61 NQSIRPNNSL LFRIYSWLVF CLLLFTTLRK FNQVGVRPNG TRENLQEFFA NPRSMITLCN 120
  121 ALIMLSGLLA SLQLYTLGAK RLKPLKILCQ FSLNVRTKQA ERRQFMINTF LAVFSGLLAL 180
  181 TMAATYAMSK WGYILYIVGT PNLDTETIFC VLLDSYALFV SRAAISALAI LFYQHCSVIR 240
  241 RSIKHLINEM VPAEQDECPL PESSLQKIHD CQISYQRIFN GKAVIEEYYS FVLFYSYGVC 300
  301 IPIFCFLMFV GMSAQSICWS EVVSIVIWIV NAILVLLLFS LPAFMINEDG DRLVASSFRM 360
  361 YHETFHEERD LTVLSQMTFF TFQIHSTKLT LSACNYFYMD RSILLSLFSA ILTYFLILWE 420
  421 FDIKNNQSLQ NIANHTIHT

Type	Start	End	Confidence
Cytoplasmic	1	69	0.92
Transmembrane Helix	70	89	0.88
Non-Cytoplasmic	90	113	0.91
Transmembrane Helix	114	137	0.87
Cytoplasmic	138	164	0.97
Transmembrane Helix	165	187	0.92
Non-Cytoplasmic	188	215	0.88
Transmembrane Helix	216	236	0.85
Cytoplasmic	237	290	0.93
Transmembrane Helix	291	312	0.91
Non-Cytoplasmic	313	323	0.70
Transmembrane Helix	324	346	0.89
Cytoplasmic	347	401	0.87
Transmembrane Helix	402	419	0.88
Non-Cytoplasmic	420	439	0.77