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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ptp-3
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQFRNKNNS MNRIARHLRN VARRKGSSLL LFLMLSTVLV AAKEDDPARL VVRPDSSTVV  60
   61 DESKISFFCR ADGNPLPSVI WRVNGKSITD HNRISIKSLA TGLSTLRFER VSLDDNATVV 120
  121 SCSADNGVAN PVVAEASLTV VPRDKVPIGF PQIELHPSLK SVEQGKTAYV SCRVRGDPRA 180
  181 KVLWLRDLIP LDIRADGRYS VSTIGNPGAL MIQHAREEDQ GKYECIARNT LGVAHSKAAN 240
  241 LYVKVRRVPP YFSYKLERQY VVGVGGNINL TCVAVGYPMP RVFWKKTDLM VLDDPSTAPI 300
  301 GKNVLTLTHV ESTENFTCVA VSALGNIEAT TTVIAKELPP PPVNIVVSSV TSESVVITWK 360
  361 PPKYNEAINK YVVNYRLKYS EGRSSRGKTM ETLENSLVID GLVAFQTYEF TVRSAGPVGV 420
  421 GLESLPVEAQ TKPSKPATAP VSPQARSLNR DSILVKWGPC EQPNGLITGY KVYYTNDLVT 480
  481 TPIREWKQHD AKSDEFMTTI NGLEPDSRYF VRVIAQNSEG DSPLSTLVTV ATRQGIPGQP 540
  541 PMLTVKALDS RRMQLTWDKP LYSSPVVGYT VRYNTSDGEK ELTLTSPHEK HVVTGLHPDK 600
  601 YYYFRVAAYS DRGQGEFTEP MISKTIASIP LSSPTIVSAA ATSSKSVEIR WKGPEQKKLN 660
  661 GVLTAYRINY FRLEDSKTAN LESVEYDEDM DDSSSFLDRM SVVVPSDATS YVLSDLLPYS 720
  721 SYEITVAAST MDGYGPESSI RVVKTLEDVP SAPRNFNAEL TSATSVKLTW DAPAAANGAL 780
  781 LGYYVYLDRM VNGEPVVEKG SKKRIVMIRD SSKRYFELDS LDPNTEYSFR LNAFNRNGDG 840
  841 EFSERKSIIT QGIPPEAPEI VSVSLDRDEP PVVARIEWKM PKMKPNETPI EKYNLWLRAQ 900
  901 GYPDSYVKAK TVDGTDLSTT ISGLWMGVVY DVLLAAENRE GRSQNATETI ATPVGSPDGE 960
  961 PIDVQYEVMK GKIVVSWRPP SEEKRNGNIT SYKAILSAMD ATADRYEQPV PAPSTSSTFE1020
 1021 VNVRRAYLFK VAAATMKGIG PYSPVLTINP DPAALVGPPT NVRVEATSNS TAVVQWDFES1080
 1081 QKADSFVVKY MHEPGNRMDT EKWKQLPVVS IDKENPKRFA VVSDLNAHKP YAFCVLAVKN1140
 1141 NRQGPCSDPP TVLESVTPTY MVQNLRVLWK TSNSVQLTWE YNGPRNVGFY VNHTGRKDYV1200
 1201 NHELQEKTMS TPGFGQDVDE KHREYLWTNL RPHMMYTIHV GVRTLPPGAR KYWPQEVVTI1260
 1261 TDPTGPPFVD VPKLVDSSGT QPGQQMIRLT PATEEYGPIS HYWIILVPAN YSTEDVVNLD1320
 1321 PIELEKATAE KRAQLARSLS VSPSKKLKRK ASEVGDDSQS ASYHPKEKRA RRATVPGAYV1380
 1381 TARLSADRVK QQYRNNQPFI VGDSQLYDGF TNYPLEHNLH YRLMMRAFAK NDVRTKDSFE1440
 1441 QRAPMSEKLS RMYSDSVLTE PFTIKSALRG ASQKSSPWVG ACIAFLVLFS IVGMLICWWL1500
 1501 RCNKKSAGRH PRHGSITKVA LTGNIMNGGG GIPGETSKLL STSNEYGRQI MNPYEQMNGN1560
 1561 HHMESSMDLY PLPTSHSRSN GYAPVPVAIP SLPNNGNNMT TVSHPAVPIA ELANHIERLR1620
 1621 MNNNAGFQSE FESIETGQHF TWEHSSADMN KHKNRYANVA AYDHSRVVLS NVEGYPGMDY1680
 1681 INANYVDGYD KPRSYIATQG PLPETFSDFW RMVWEEQSVT IVMLTNLEER SRVKCDQYWP1740
 1741 SRGTATYGDI EVTLLESVHL AHYTMRTMRL KMVGEPEVRE IKHLQYTAWP DHGVPDHPTP1800
 1801 FLIFLKRVKT LNPNDAGPII SHCSAGIGRT GAFIVIDCML ERLRYDNTVD IYGCVTALRA1860
 1861 QRSYMVQTEE QYIFIHDAVL DAVNSGSTEV PASRLHQHLH ILSQPSADQL SGIDMEFRHL1920
 1921 TTLKWTSNRC TVANLPVNRP KNRMLSAVPY DSNRVIMRLL PGADGSDYIN ASWIDGYKER1980
 1981 GAYIATQAPT NETAADFWRA IWEHNSPIIA MLVRTNERGQ EQCSDYWPLE TGVQVGMLVV2040
 2041 EPMAEYDMKH YHLREFRISD INTREVRTVR QFHFMEWPDV GKPHTADHFL DFVTQVHNTY2100
 2101 AQFGCTGPIT VHCCSGAGRT AVFIALSIIL DRMRAEHVVD VFTTVKLLRT ERQNMIQEPE2160
 2161 QYHFLYLAAY EYLAAYDNFS 

YRC Informatics Platform - Version 3.0
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