YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE30483
Protein type:	Globular with Signal Peptide
Type Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNYNKPIQL LCVLVVVLFF INNQFVQRTT WSRGLRSPPL DSRIFQEKSE IERSTLPPIP  60
   61 KGFLSSKLAS TARLANHIFE LVSVYGMAKS LNRKPAIFVE DSKYNLLITG VRKVLPGLLD 120
  121 EFQIFEYPVH NKATKVPLSE KCCIFDNPDK FNNISSEYLH LTGHFYQSWK YFDKYKEKVQ 180
  181 SFVKPAIDFS PLPNSDSSNF ISRICIHIRR TDFVDGQHHS SNVSFIKPAL EFIKEREQKD 240
  241 VNKKMLTVIM GDDPDFEAKM FEGTVRAKKE AKIEETTKYF VSENTPQDDL AYSHYSCDAT 300
  301 LITAPSSTFG WWLGYLSKGQ AVYYQDIRST NDVNYKKGVL DPDDFFVPSW TSIMLDENKK 360
  361 VVVVT

Type	Start	End	Confidence
Signal Peptide	1	28	0.59
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	365	0.94