YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE30481
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWWFGGNPSP SDYPNAAIPN FNMHAFVIFS VFLIPLIAYI LILPGVRRKR VVTTVTYVLM  60
   61 LAVGGALIAS LIYPCWASGS QMIYTQFRGH SNERILAKIG VEIGLQKVNV TLKFERLLSS 120
  121 NDVLPGSDMT ELYYNEGFDI SGISSMAEAL HHGLENGLPY PMLSVLEYFS LNQDSFDWGR 180
  181 HYRVAGHYTH AAIWFAFACW CLSVVLMLFL PHNAYKSILA TGISCLIACL VYLLLSPCEL 240
  241 RIAFTGENFE RVDLTATFSF CFYLIFAIGI LCVLCGLGLG ICEHWRIYTL STFLDASLDE 300
  301 HVGPKWKKLP TGGPALQGVQ IGAYGTNTTN SSRDKNDISS DKTAGSSGFQ SRTSTCQSSA 360
  361 SSASLRSQSS IETVHDEAEL ERTHVHFLQE PCSSSST

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.97
Transmembrane Helix	21	43	0.96
Cytoplasmic	44	52	0.87
Transmembrane Helix	53	77	0.87
Non-Cytoplasmic	78	187	0.95
Transmembrane Helix	188	210	0.90
Cytoplasmic	211	217	0.77
Transmembrane Helix	218	236	0.94
Non-Cytoplasmic	237	258	0.76
Transmembrane Helix	259	281	0.91
Cytoplasmic	282	397	0.91