YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lnp-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNLFSRNKS PATELERVAL SIDDLKKRLQ TISSSNTNTL YYYYMSIVVI LSIAMAHTWL  60
   61 RFEDPQKTYV ACALMLGAIG IVLAGRYVIN GFFSWRTNRT TQKLENAISQ KTTLLDLVKE 120
  121 TLKFKEAKEI LDRYEKIEQN TTIDKNDSTL KSPSPIKKLT ADSSMFATPK QEQKRVETPT 180
  181 AQGPNSAMNS MNMTPYHQRN RNAVPIRPFL RQTTAFDRVL DYFMSDGPNC RNALICSICH 240
  241 THNGMSTPAE YPYISFRCFE CGHLNPAKKM GPQIPLTRPP MGPKGIQHNG RVGPSENTHN 300
  301 MMENQKPSTD LTPSASQNGS EKGSDSENEK VPESKTMETE FH

Type	Start	End	Confidence
Cytoplasmic	1	39	0.56
Transmembrane Helix	40	60	0.95
Non-Cytoplasmic	61	67	0.51
Transmembrane Helix	68	89	0.93
Cytoplasmic	90	342	0.56