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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|146230097, gi...
Protein type: Globular with Signal Peptide
Type Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNPSSSGLG SSSGLTHFGI GLANTVQSEV TPYLPLPSLP IFCGAAEPGE FKLFDEVGQG  60
   61 SGYRSLDRSE ILAQSSRIAN MLHETDVSYL DLRNEARAPD CNSGEHFQLY DLVLRCNPGA 120
  121 FEYVTPGPTC DPLFTNEGPQ KIISEPSVPV KMQRQTDTHL ARSIEPEPVK RVLRPNHVED 180
  181 HSWQHETLTN QSPKDVTAYD SRPETITMNE LSASKKPKGK KKRKDDLSSV QPDPSVLQES 240
  241 IVQNFCEMLE DFCGRAEVPG DDRDEAEWSS VPVDEVRVLI NELMTIRSKM LLHMVPVDIL 300
  301 SRLLRTLDHQ IHRAEGLSIY SEHSDSDSVL LVLGALESIH ASLAVMANSD MPKQLYKEEI 360
  361 IERILEFSRH QMMAVMSAYD PSYRTGSKPA ENLAFEGDDD DDNPDHDMGS ASKRRRIVKN 420
  421 SKVKKASVNR ISGAVNTALQ KLCTILGLLK DLLLVERLSD SCILQLLKTS ITTFLVENIQ 480
  481 ILQLKAISLI GGIYNSYSQH RTYVIDEISQ LLWKLPSSKR ALRAYLLPDE EQRQIQMVTA 540
  541 LLIQLVHNST SLPETSRQAA SGNSILETSV DVGYLTKCHE AATETCCLFW TRVLERFTSF 600
  601 KGQDASEIKL IIENLVMDLL TALNLPEYPS VSPILEVLCV ILLHNAGLKS KDVSARIMAI 660
  661 ELLGTIAARL KRDAVLCSKD RFWTLLESDS EISVDQVCTK DCTFCLGKRA GNLLVCQICQ 720
  721 RRFHGDCLGL KELDISSRNW HCPLCVCKRQ LLVLQSYCKT DTKGTGKLES EESIENPSMI 780
  781 TKTEVVQQML LNYLQDVGSA DDVHTFICWF YLCLWYKDVP KSQNKFKYYI ARLKAKSIIR 840
  841 NSGATTSFLT RDAIKQITLA LGMNSSFSRG FDKILNMLLA SLRENAPNIR AKALRAVSII 900
  901 VEADPEVLCD KRVQLAVEGR FCDSAISVRE AALELVGRHI ASHPDVGIKY FEKVAERIKD 960
  961 TGVSVRKRAI KIIRDMCTSN PNFSEFTSAC AEILSRISDD ESSVQDLVCK TFYEFWFEEP1020
 1021 PGHHTQFASD ASSIPLELEK KTKQMVGLLS RTPNQQLLVT IIKRALALDF FPQAAKAAGI1080
 1081 NPVALASVRR RCELMCKCLL EKILQVEEMS REEGEVQVLP YVLVLHAFCL VDPGLCTPAS1140
 1141 DPTKFVITLQ PYLKSQADSR TGAQLLESII FIIDSVLPLI RKLPLSVTED LEQDLKHMIV1200
 1201 RHSFLTVVHA CVRCLCSVSK LAGKGVSIVE HLLQFFFKRL EAQGSDNTQI AGRSLFCLGL1260
 1261 LIRHGNSLIS TSGGKNFNLS GCLNLFKRHL RTEDIALKVR SLQALGFILI ARPEYMLEED1320
 1321 IGKIIETTLA DEANGRMKMQ ALQNMYEYLL DAEKQLGSEK ASDNTVNSVE QGGHNVPVAA1380
 1381 GAGDTNICGG IVQLFWDKIL GRCLDFDDQI RQTSLKIVEV VLRQGLVHPI TCVPYLIALE1440
 1441 TDPQEANQKL AHHLLMNMHE KYPAFFESRL GDGLQMSFIF MQSISQVTSE PNQSLQQKGS1500
 1501 TNMLGKNDHA SSTLTQARLG VSRIYKLIRG NRVSRNKFMT SIVRKFDNPT WNGSVISFLK1560
 1561 YCTETLALLP FTSPDEPLYL VYSINRVMQI RAGAVESNLK ALLHKDSAKT QHGNGAYQQD1620
 1621 PIPGHMNMMD LNTRIQEEPR HWNSYGHATL IDLNGSVYQD SRDQFTSYQV HNGKADVHKM1680
 1681 TSSDPPELST DDLQKIQVDC LAAIAIQLLL KLKRYLKVTY SLNDDRCQAY SPTEPLKPGD1740
 1741 PLSRQSVAFD LSETRTDLPS TYQDLVQRYQ EFKNAMREDT VDFTIYSTNV KRKRPTPRKT1800
 1801 SRSAKKTVAY NEDDDDDDND DRGWHGGGGR GAARRLNYST RSSNRR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle