YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lgc-9
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYFIQLLSVL ISMKVGHIRS SRLLQHSQHG HYEDDYIKTE PTHLIETIQR RYDKRVRPFA  60
   61 ESNRPVIVHM TIVLGILTEV RENQQVASFV ISHVQKWRDP KLAWNPADHS GLTQVVMPRS 120
  121 LVWVPKLFIY NSMDTKDMLT DDRYDVRIQH TGHVKVNSPQ FVSTLCRINI DLFPFDTQFC 180
  181 AIALASPLLS VEEMDVNATQ PPVDSYFSGN AEWQVMNVTV KQMKFMEEGE YRAEVHYILH 240
  241 LNRRPTYYIT VIVVPTFLIS ALSILGIFSP GSNDGPRNEK VSLGLGSLLA MTVLLDIVAG 300
  301 AMPKSDAIPL LGYYIMLVIL LCAIGVAVSM AMLSMSRSCI QTSKMPPPHY YRLLFLNVCR 360
  361 VVKQNSGLNG VAMNEKPTAI TPRFPDLIAI YNQLIEVARA QRTYRERIEK QKWQHRVEIE 420
  421 WNKIFARIDF FFLFLFEMFN VLILVLFLRC AFLPVPPLPE NFSI

Type	Start	End	Confidence
Non-Cytoplasmic	1	246	0.88
Transmembrane Helix	247	269	0.93
Cytoplasmic	270	280	0.84
Transmembrane Helix	281	302	0.88
Non-Cytoplasmic	303	309	0.87
Transmembrane Helix	310	334	0.88
Cytoplasmic	335	429	0.95
Transmembrane Helix	430	453	0.89
Non-Cytoplasmic	454	464	0.93