YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-144
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEVEKGTWL TVMEKLLVTA SATAATFAVF AVLFTVPSLY NTINEVHDQV LDGVSVFRVE  60
   61 TDSAWTEMMD IQITVTPPTK PRVNPFNSIF RQKRQTFSGL PAWCQCEPTK PTCPPGPPGP 120
  121 PGQPGAPGTP GAPGPKGDDN TATFAPLTCA PVSQDCVKCP EGPAGPAGPE GPAGPAGPDG 180
  181 QPGAPGNAGN PGSDGQPGAP GDNGQDGAPG QDGQPGAPGQ DGQRGSGAPG GPGAPGNAGP 240
  241 AGPAGQDGAP GQDGQPGPAG PAGQDGAPGN AGSDGQPGAP GGPGLPGNDA AYCACPPRSA 300
  301 VFVSRH

Type	Start	End	Confidence
Cytoplasmic	1	15	0.72
Transmembrane Helix	16	36	0.74
Non-Cytoplasmic	37	306	0.96