YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE29529
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQISFRKCLI FYQMSSMERQ NELQKITIIR VICSVQLISM IAVTAHSTAM PFLVRIANKT  60
   61 HFLPTTSVFM MEVLKLGFCL IITLFKSGSI KKTCHELHKT IWQNRLETMK VAVPAVVYAI 120
  121 QNNLYYIALA NVDPTTYSVT LQIRILTTAA LSVCLLNKKL SWYQWGAQVM ALLGVVIVQL 180
  181 DKTNSHKEAV GNFWIGVSAV VGMCWTSAFA GVYFEKMLKN SSADVWIQNI RLSILTLFFA 240
  241 GITMITTDGE AVFGGRMFEG WSNMVWLVTI LNSVGGLCIS LVMKYADNVM KTYCQSIAIG 300
  301 LTSLVSICLG ERILTVYLVY GVTLVTSSVV VYSLFPVAPP ALSDYHKLEQ QDDVAELLKS 360
  361 SGVEDEEEEE DEIFGELEHK IEL

Type	Start	End	Confidence
Cytoplasmic	1	25	0.99
Transmembrane Helix	26	49	0.87
Non-Cytoplasmic	50	65	0.83
Transmembrane Helix	66	85	0.88
Cytoplasmic	86	161	0.63
Transmembrane Helix	162	180	0.87
Non-Cytoplasmic	181	192	0.74
Transmembrane Helix	193	214	0.93
Cytoplasmic	215	226	0.86
Transmembrane Helix	227	247	0.84
Non-Cytoplasmic	248	263	0.72
Transmembrane Helix	264	283	0.95
Cytoplasmic	284	291	0.76
Transmembrane Helix	292	310	0.70
Non-Cytoplasmic	311	315	0.41
Transmembrane Helix	316	338	0.77
Cytoplasmic	339	383	0.65