YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE29527
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.79
Transmembrane Helix	16	33	0.83
Non-Cytoplasmic	34	48	0.68
Transmembrane Helix	49	69	0.80
Cytoplasmic	70	170	0.99
Transmembrane Helix	171	191	0.92
Non-Cytoplasmic	192	197	0.76
Transmembrane Helix	198	217	0.93
Cytoplasmic	218	225	0.76
Transmembrane Helix	226	246	0.91
Non-Cytoplasmic	247	251	0.77
Transmembrane Helix	252	272	0.91
Cytoplasmic	273	280	0.88
Transmembrane Helix	281	300	0.95
Non-Cytoplasmic	301	319	0.82
Transmembrane Helix	320	339	0.90
Cytoplasmic	340	347	0.71
Transmembrane Helix	348	368	0.82
Non-Cytoplasmic	369	374	0.72
Transmembrane Helix	375	394	0.93
Cytoplasmic	395	429	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATNRESTG CLDSKTVGIC LLLIVNVLWV LSSELTRFIF VDEEFRRPFF TVYVKSCTLI  60
   61 IYMIRYLFFE AKDDHNSYKI LITENSIDSE NYEISCESLA LEGYESVTDV DSDVESVIVD 120
  121 GEKRQRKIRF AERREIRRMP ASNAEDQRKA RLPYRHPTIE CQLYLSRHVK YTLFFFAPLW 180
  181 LLCSFTYQAA LAFTSVSSLN LVSSSSSVFV LAFAICFPST NNRFSAYKCL LVAINIAGVL 240
  241 IVSHYIPSFL GALFAQMSAL AYAVYLFAFG HFEEKYGKLD INLMFGAIGV IALVLGTPTL 300
  301 NLLDRFGVEP LHPLPNATQF SSILFSALIG TIVADYLWLL AAGMCDSLTT CLSMTVSIPL 360
  361 SFLADTVIRS KAPTLAQVIA SIPILVAFVG AAYAQNPSTS IRKGLSKRVR KVESLSPDNE 420
  421 HLMDSLSDE