YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	acl-14
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCDEQTQKLL DLANGQRFRP PGSRLVIEQG SFASRLWWLV KAPFRTLMCL SLVTIFFATY  60
   61 FGFMLPVMWA RTVWPRLYWF VEGKLYRWLQ SFIAYWGYTA GYDVYEYGDD VTTYYRDERV 120
  121 LMMCNHQSTA DVPTLMTVLQ NKGVASRKTL WLMDVMFRWT PFGIIGNNHG DYFIQQGKAT 180
  181 RDKELIRLKK HLHDVFWDRD RRWVILFPEG GFYYKRVESS QSYGKKNGFP HLLYTTLPRM 240
  241 GAVQAILEEV GPRTEDSDEP RERSNSKLKL LQDTVGAIRE KKYVKDMFDD HIVFEINTRP 300
  301 PIKYVLDVTI AYPNGIPLSL ATFGLGTREK CDIAVNYKIY DAAEVPFEDE EKLRDWMYEV 360
  361 YKEKDEMLAR YYSTGEFNPG EKGTRIAFSW AKIIGMYGFW FGSFYAQYNV YSYLITSIAK 420
  421 FLLFPFSS

Type	Start	End	Confidence
Cytoplasmic	1	43	0.66
Transmembrane Helix	44	70	0.82
Non-Cytoplasmic	71	428	0.50