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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ten-1
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVFAVHFIL CLTKYIFCRP HTSGGAPNPT YSDASTTLLK YPLAAGTNQN RRRQQVGTMN  60
   61 NGDPVAGGPM ALSKKKKKFD DDSDTCSRWP SKWNILLAAA LLVALFVICI LLFRAPNYVY 120
  121 TQPAPSSDAT SSAAAAASRY QDLGLRALPP AISLGERVDV EFFPKSMATT ELTVTKPSRI 180
  181 RFNATVGSGA QLVLLMSAGV HPSLSLHDAL FPIRADRIRD SKSPTHIVEE FGSRSRRSLG 240
  241 ASSSRHRNIE ILSPRSATFE QFVLEGRHYL TFINERSRVE PISFVAEELQ RPTTPPKTSS 300
  301 SGTSGAKEHP LASVLVCESN CNQRGECVHG KCHCAPGFTG RTCDEAVCPV VCSGNGVFSG 360
  361 GICVCKSGFK GKECEMRHNW CEVADCNGRG RCDTDGRCRC NPGWTGEACE LRACPHASCH 420
  421 DRGVCVNGTC YCMDGWRGND CSVFADAIVH VPQAQSPPRR GQEPTESSKT RKAQVKPTPT 480
  481 SEKKKESREL QKPIIATVQV PTESSHPCSA HGQLIDDICQ CESGWDSVDC SQQACQCVNG 540
  541 DCLDDGSCQC WKGWRGSNCT DKKCAIGCED RGKCASDGSC KCSSGWNGEN CAIDGCPNQC 600
  601 SGKGECGMDR RSSEWSCRCQ AGSTGVDCSV SVEMHCDDGL DNDSDGLIDC DDPECCSSSS 660
  661 CSSESVCSTA ASPIEVLMRM PPIFNANFAQ RVGFLIMEKS VQSYTDSSQF NENLISVIRG 720
  721 RVMWGGSPTG SDDLSTYSNK STVPLVGVRV SDAAHPLYGF TLTREDGYFD LTVNGARSVT 780
  781 LQFLRTQFQS VKKSVFVSPR QIIHIDDIVL YRQSGGSPPA ISMAPARAKC SPTLRRIPDV 840
  841 VLISNWQYTS DGIETDETSD SSRIVVDSRS IFESLPIQGT DVRLVYDSAR SPAAPSTMLI 900
  901 GLLYDRVDKE LRKVHINIRI AGRRFDRVLA PRTNLTYVFA WDKMNAYRQS ESGLVPVTVR 960
  961 VGYEYQGCDR TSERVWQTRR SQMMGATARK MIGTMWTLDI HHHLDIVNNV VEMGNGGYRL1020
 1021 ITESEPRVST FAGLDGVKRD VECLKCEGKV DSISLFRPTT VVYAQDGSLI IGDHNMIRRV1080
 1081 SQDGQVSTIL TLGLADTSHS YYIAVSPVDG TIAISLPLHK QVWRISSLEP QDSRNNYDVL1140
 1141 AGDGTVCASA VDSCGDGALA QNAQLIFPKG ISFDKMGNLY LADSRRIRVI DTTGHIRSIG1200
 1201 ETTPDQHPIR TCAQITKLVD LQMEWPTSLT IDPITGSVLV LDTNVVYEID VVHDVVTIAL1260
 1261 GSPTTCDLAN ATSSASAKSL DHRRHLIQNA RDITVGTDGA IYVVESDGRR LNQVRKLSSD1320
 1321 RSTFSILTGG KSPCSCDVAA CGCDDAVSLR DVAASQAHLS SPYAVCVSPS GDVIIADSGN1380
 1381 SKIKKVSARM AKYDGRSRTY EVTDAERQEK YTFNRHGQHS STVSLITGRT FFNFSYQVDS1440
 1441 PISMISEIRA ASGVVLRVLK RNDSLFDLET TLGQRTTLTM SAYDGTLEQV SKRDSATSRD1500
 1501 ATKLFYKKGL LTSRIDVATA VGFEYDEYGR AIGLKRDREY WRLGEETISM GSVNTEVLLN1560
 1561 GQRFQQVRLG EGNLAVHSTN GATTRLISLR NEGYSLASPL GTSTLYDKSS SIPDSNGEPL1620
 1621 ISRRRTKVPA IGNPQRRELT TRWDWRHVAR RGDDSDGSLG RRKVAEINGV NMFSMEYDVK1680
 1681 SNQDTLRLGS TTDDAQALLF IDYTSSGRIR RISAPEDSQM AEMNITWDGA GRKSEVTWGS1740
 1741 WKIRLTYDNS NRLTEHAIDG ARVPIKMSYA GASRRPNEIQ HDGAKWNIQY DNYDRIKEVI1800
 1801 SKSQEATSFS SIALGGDEWV LKRRTSLNSK PSLVRLSREG KVLESTTPDE NHYWLERKDP1860
 1861 ITGRTTEILN DEETTVVTCW SPEGAPMCSR SRNLQENTTM QGHLVARKSV TIMTPTSSEP1920
 1921 SITSSFTYEY DDMLRVTTIQ PVIEQSVLES IQLSYDERRG HVAAINGFKW ARDASTSRCQ1980
 1981 GHGLMYETSK ANDHRQVVER KLIFGDARAS IKIIRDKAGR ASESHLEISS SGTQRNQKIT2040
 2041 RTFDAAGRVA SVEQNDQEPV RIIWNSDARV EKINDRVVEW NRGGALKTFQ DISYQVDSIG2100
 2101 WVVKRDNTTV FGYDGKGRLV SARSSQLRIN IFYDREDRVV QIQNSKDFIH FYYGYIDTPK2160
 2161 LVSHFSKNGK ISTLFYDDDS VPFAMQSDDG TRYALLTDET STIKAIIGDS NVLRIIDRSV2220
 2221 FGALLPSSSS SHPFLPIGYL GGIEISEISV SILNNGRPLD LYSERYMSIS PEAVVRLELN2280
 2281 EKFSNSIDLM ALEIDRQPFR VENVPEDFET WFSLAGLSPN LLPSAHLGLP ASSAIVHRLL2340
 2341 SSFPRKLRPL THLTTVLPTR LASDISLTSP TSETSWSIDD VGFSNLLILN EDATTGEVMV2400
 2401 EMLSDLKSEE REVISKLFDG VKSLDFATWG LVPTRHLWRA PNSKLELSST SFSHFTMAVN2460
 2461 KDSVELRNGK SKIVVHFSEN KAEIVKKIVE ELKTRENIAV WRAERKRAEA GEKTWRQWSD2520
 2521 RETRELTSKG SVSGYDIEMK PAHQSGLLAS VHSWKFRKSE 

YRC Informatics Platform - Version 3.0
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