YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE29388
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	54	0.97
Transmembrane Helix	55	75	0.90
Non-Cytoplasmic	76	92	0.92
Transmembrane Helix	93	116	0.84
Cytoplasmic	117	124	0.86
Transmembrane Helix	125	146	0.91
Non-Cytoplasmic	147	152	0.80
Transmembrane Helix	153	175	0.89
Cytoplasmic	176	186	0.91
Transmembrane Helix	187	209	0.89
Non-Cytoplasmic	210	228	0.86
Transmembrane Helix	229	249	0.94
Cytoplasmic	250	299	0.87
Transmembrane Helix	300	321	0.68
Non-Cytoplasmic	322	327	0.83
Transmembrane Helix	328	350	0.91
Cytoplasmic	351	359	0.83
Transmembrane Helix	360	379	0.94
Non-Cytoplasmic	380	412	0.92
Transmembrane Helix	413	433	0.92
Cytoplasmic	434	449	0.82
Transmembrane Helix	450	473	0.80
Non-Cytoplasmic	474	481	0.71
Transmembrane Helix	482	501	0.96
Cytoplasmic	502	508	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQKVADSEK SVDPVFRITS GPTSLEKDES DSSLDAKEEC FSLADEDAEE TNWRLIYITA  60
   61 VVSFLGAIEG TAVHMSEWPY MREIDPDATV KFFGIASSAS KAAHALFVLI FAVWSFKYKT 120
  121 VKWPLIAGRI IAMVACFIYL CIEYLPTGRR YLMMFCYILF DISGSSPSIL RAYIAAVSMP 180
  181 KDRSKAFAAM SLSMTLSIIC GPLIQMAFTT IPYPGFTIIP HVKFHVYSAP IWIANSTNFI 240
  241 SIAIIVFGMK ELPRKPKTKK PKKPSIFELE GLKMRIQKIK KANIDWILVF VVWIAKCGKT 300
  301 MTARSIGTLL PILMMVQYGW TGIETVRITS FLMGGSGLLS MFVIGSFMFC KLGTIVQPRF 360
  361 IYLFSISLFT MLYIVTYPYK SIGVEVAMYN ATDNTGCDPD KYSWCEGGIA PQPILFLCCM 420
  421 VFVFGMTMPS SAISLDTIYS KILGNIDQSV MQGAAVILDD IMMVITPTYA SYIYTLLGLQ 480
  481 PLWIMNGCIM SCVVGLWIVM LQKFKDYS