YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ser-4
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDETLLNLT ASPSSQPATL LSAVARGTHL VDQFPAHAEI FSDIERPLVQ TVILASVLLV  60
   61 LILSCFIGNL FVILAIIMER DLRGRPQYYL IFSLAVADLL VGMIVTPLGA WFTVTGTWNL 120
  121 GVVVCDFWIS VDVLVCTASI LHLVAIALDR YWSITDICYV QNRTPKRITL MLAVIWFTSL 180
  181 LISLAPFAGW KDEGFSDRVL KSHVCLISQQ ISYQVFSTAT AFYIPLIAII CVYWKIMRAA 240
  241 KKRFKRERDR RTVIRPPPDA IDEKKAMMPK KSKKCPLPPA VVISDIQANG GTGGKTNSIK 300
  301 NPPRHNESSS SASEEERTMT QTNHAPGDVT TQETKIDEEN GRSKPGIVKR RRRTKESNEM 360
  361 KRERKAWRTL AIITGTFVAC WTPFFLVSIY RPICGCQISP VLEQVTLWLG YLNSALNPII 420
  421 YTVFSQDFRA AFKRIIKRMC LIHDY

Type	Start	End	Confidence
Non-Cytoplasmic	1	51	0.87
Transmembrane Helix	52	77	0.88
Cytoplasmic	78	87	0.94
Transmembrane Helix	88	111	0.91
Non-Cytoplasmic	112	127	0.83
Transmembrane Helix	128	148	0.92
Cytoplasmic	149	167	0.92
Transmembrane Helix	168	190	0.91
Non-Cytoplasmic	191	215	0.96
Transmembrane Helix	216	237	0.90
Cytoplasmic	238	368	0.99
Transmembrane Helix	369	389	0.92
Non-Cytoplasmic	390	406	0.87
Transmembrane Helix	407	425	0.85
Cytoplasmic	426	445	0.81