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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: snf-12
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGEWKSALR LQIEALAKRN ELHRKSSVDE IKKRTVDMDK RIVKLRELVG SSANDAALFY  60
   61 LECVCHADET ERLLNRGSSV GKEKKWKKVK RKTSSSVAPP LSRTISSLPG VSSPDVIQTI 120
  121 DVSALEDQTP QRPHWWDQFQ LYRRTDLLRF SKQNDRRELW RTQKDFFLSC LGFMVGVGHT 180
  181 MRFPAKVYQH GGGVFFIPYL FSLIFFGLPL VFLHLSLGQY TGQAANTAFQ RLMPIGSGVG 240
  241 WALVVIAIPV AVYYNIIVAW AIHYFFQSAK GLLLGDELPW ETCRDEWQLD NRCCNLHNLH 300
  301 SCFNSTNSIT APEAFFHSEV LSLSTFGDFA LGPLQSHLVL SLAAAWLLVF FGVFKGLGSI 360
  361 AQTMNVTATV PYLLLSILLL RGISLPGANK GLTFLFTVDS TKLWKWQIWK SAAEQVFYEL 420
  421 GIDAGPLISM AAFSRYRNNI YRDSVLLVIM DALTSCLSGM VIFSFVGFIA SESNSNVNDV 480
  481 LKHDPLYLSF TVYPGVTSFM YWGGLWATLF FGMLVLAAID AEFAWLEMIA SAFMNHFSMK 540
  541 NKAVENRLLA FLCLAGFFLG LPLCAQGGIF VFHAIENLNA NWNSFSLALL SVAIVCYVYG 600
  601 IDNYLTDISA MLRVPRIQIS KATRLKEKLI YFFGPGGIYI KFSLCFICPV ILTVLLVASV 660
  661 LGYQRISFAG RPIPIDYEIV AWIVMIGPLL VVPLVAFMQI RQIRNEGKLL KSLFDTSEWR 720
  721 ESQDDSLEPK DLYMRQSGKF ESPPNRRRTP TIFTHRENTY MYIDSRGPTV RSRVFPLGAS 780
  781 LDPYGWKAGR LRDRQQQIEE TASNYSEEDS ATTNSFMAST VKHNDDMELT LFGSPPAILG 840
  841 DDEKIMTTRF SESMPVNYKC RNVEVPRIPN KLPQNMERMA RKTRKKRSSP SASDPPVPTS 900
  901 PLPPPPKLQH CRSEPPMMNS KESHSPEIIT PGDDSPSISN SSDDSSDDCF RRATVIRRKT 960
  961 SDDDAFTHFS TATAESISIT PLDFPRQRSL SSVAIYDQEQ KNGRSKVLSQ LKRPKPIDMP1020
 1021 PK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle