YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	acr-12
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYKKRLQMF SFNWALILLV AVGGTNAFKI KRTAKDLESQ LYEDLLFDYN KVPRPVKNSS  60
   61 DILTVDVGAS LIRIIDVDEK NQVLTTNLWL EMKWNDAKLT WTPEKYGGLK TLHIPSDFIW 120
  121 TPDLVLYNNA AGDPDITILT DALVTFEGNV YWQPPAIYKS FCPIDVTWFP YDSQKCEMKF 180
  181 GTWTYTGRYV DLKQLPQEEV VTITKDDNDV EFMQQGMDLS FFYRSAEWDL LSLTSERHSV 240
  241 LYASCCGPEK YVDITYYFGL RRKTLFFTCN LILPCFLISI LTTFVFYLSD HKITFSISIL 300
  301 VTLTVFFLVL IDLMPPTSLV IPMFGRYLIT TMILVALSTV VSVITVNFRF RSGSAHKMSP 360
  361 WIRAVFLKFL PKILLMSRPE KGEVTKQPPL VNAASLVGSN YATAAKAANE YRNKAKGKNN 420
  421 DLMSLRGKPS SQAVLNNTFD MRMRNNDSTV ENRLKPYLCA QNNNAPTVAF RKTKRQKSKS 480
  481 VDDVVFMNLL NQVRFIAEHF RHNELEGEIS DDWTFVAMVL DRLFLIIFSV LNVGTVFIIL 540
  541 ESPSLYDYSK PMNITVPNKP LGQANFYSSW NLK

Type	Start	End	Confidence
Signal Peptide	1	27	0.97
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	264	0.99
Transmembrane Helix	265	288	0.89
Cytoplasmic	289	294	0.82
Transmembrane Helix	295	315	0.90
Non-Cytoplasmic	316	326	0.79
Transmembrane Helix	327	348	0.94
Cytoplasmic	349	522	0.97
Transmembrane Helix	523	540	0.88
Non-Cytoplasmic	541	573	0.85