YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	aqp-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLRFIRKIM TAEEDTLPER LRFHGVHTNI LARNLIAEFF GTFLLCFIGL SIVFQFHAGG  60
   61 GKTTEWIGVN IGWGFAIMFA VMATARMSGG HLNPAVSLLL WSLGHLKLAW VPLYAIAQTA 120
  121 GAFVASLGMY SYYYEQFNAF DGGNRTILGA TGTAGCFASY PSPNLGVWGP YIDQCVGTGV 180
  181 LAYFLCVVID ERNQIPKIWH PMFFGFLVMM IGTGFGMNIG YPINPARDLG PRLFSYFIYG 240
  241 PGVFHSPYPN YWLAPAIAPF VGALVGGWFY HFSLGMHNPD IEEADDIFVQ QPPKSVEQQK 300
  301 LLQA

Type	Start	End	Confidence
Cytoplasmic	1	34	0.86
Transmembrane Helix	35	58	0.85
Non-Cytoplasmic	59	65	0.79
Transmembrane Helix	66	90	0.81
Cytoplasmic	91	109	0.69
Transmembrane Helix	110	132	0.88
Non-Cytoplasmic	133	169	0.80
Transmembrane Helix	170	189	0.93
Cytoplasmic	190	197	0.93
Transmembrane Helix	198	221	0.86
Non-Cytoplasmic	222	250	0.93
Transmembrane Helix	251	272	0.93
Cytoplasmic	273	304	0.97