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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: cdh-5
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTTVRVSPN SQSESLQILV NDEDLQPGMP PATYQYILTG LGATIFAVDQ RGFVYLNVPK  60
   61 IDADPPNPST YQLNVEAREV NTVPTRRSEP VTITIHILDI NDNSPQFEQP IYMANTTASG 120
  121 DERDVVKVVA TDVDSGAFGQ VTYTIAQVTN GGEDKFRYET ATNMLVATGN LVPGERYQVV 180
  181 IEAIDGGGRS SQAIVIVLAL DPMHQTFSSL APLPGMETFM PNPLAMATTP GTMVTSAESE 240
  241 ETIQTFVTEV NENTPPNTVV VSLGDESSRE LTYFNVVGGN EEGKFAIDDA GTIVTAEELD 300
  301 REKTAMYSLQ VETRSRNPDQ HLYWTLVQVT VMDVNDNAPT FTDPQPIRLR LSIDDIEQLT 360
  361 GNMIIGRIGV EDADADDNGR LELRIMPPHN KLFAISNDGI LSVNGDFTAA HFGEHDLTVV 420
  421 ARDHGEPSLE TRARVQISIF GTLITMATVA PTNEVFEYTS SVEEEPQTTN PDEHLQTVTT 480
  481 SPSTKNQVSQ QIFSSFPAPQ VEQTGAPVEP EFPQFPTFPT LSPHPQELPS LPTTKMAPPQ 540
  541 PVPTQSPPLP TPKRLAPVFK PSQITVQIDE NESQVEITKA HATYPDGLSG TITYVLHKGD 600
  601 PSLFSVSSYS GSVNLLRALD AETNSTVTIQ ISTSEAQTLE VDPKLAHFVS ITINVADKND 660
  661 WIPNFESASY EFDVKEDTLP GTIVGQVNAF DQDRDEPNNR IRYRLLSAGG LEAHFNVNAE 720
  721 SGLITLARPI DAFAGEKITL RIEGADSGML PLSSTTTVLI NVVATSSHLI PDASPVSNTP 780
  781 NEGELQFSLR NYTASVSEAV RPPHLVQVLS VMNKPTDTRF IICNIISGNY RGAFGITAGN 840
  841 DGNCELRTQM ELDRETVERY LLNITVTAGA QTDYALVSIT VLDVNDNVPR FVYDSDLGLT 900
  901 TYFGAVSSVA NAFTRVLTVK AEDADLGNSS LVNYALDPLS AHSKYFSISP FGEISTKQSM 960
  961 STILSRNRLQ FFEFRVSACD SPISGQQLCS KADVVVNVIG STNRFKMIIY GLNPQQLKKH1020
 1021 EKDLVKSTRQ FTGSCNLLTI EKMIEHTAIE NQIRTDIYWY AVNPTTKKIC KKQDIRKLFE1080
 1081 TSNVQLIAGK VQPWFRLERI SEDAGDEGNM SSGGILSTNW KTSNILLIIL AVTVALGAII1140
 1141 GICAVCVFWS RYKTAQRNAS NFSHSYPQKL GPIYHPTMMG VDPRTEYDYE TQNVNMLISD1200
 1201 EDLTMKSGSI GVPAHQRMTL MGAGGGPGMG GPGGPQNGQG NQSYRTYGYR PAHSTAYEGD1260
 1261 FSIEESMYAI NPSGRLDPIT KRIQTIVIPT PDYHQRTHPN QHKSIL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle