YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ubc-6
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQYNTKNA GVRRLMKEAM ELRQPTEMYH AQPMEDNLFE WHFTIRGTLG TDFEGGIYHG  60
   61 RIIFPADYPM KPPNLILLTP NGRFELNKKV CLSISGYHPE TWLPSWSIRT ALLALIGFLP 120
  121 STPGGALGSL DYPPKERQRL AKLSCEWKCK ECGCVMKTAL LPITEDGQLK QTEEAKTLAA 180
  181 QLKFQDESVV KKEVEAANNQ KNPTETEPSE ETSSVPTENV EESEEDADER EEGTTVNVNS 240
  241 SEVPDVAQPA VQPIRDPQPL VFQHHAPRLA STNFDYTLLY KIPVIALCFA IFFTLLARRF 300
  301 LVDNLTSPKD GSEL

Type	Start	End	Confidence
Non-Cytoplasmic	1	276	0.55
Transmembrane Helix	277	297	0.83
Cytoplasmic	298	314	0.43