YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	wht-1
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKRRVKEIL HNVSGMAESG KLLAILGSSG AGKTTLMNVL TSRNLTNLDV QGSILIDGRR  60
   61 ANKWKIREMS AFVQQHDMFV GTMTAREHLQ FMARLRMGDQ YYSDHERQLR VEQVLTQMGL 120
  121 KKCADTVIGI PNQLKGLSCG EKKRLSFASE ILTCPKILFC DEPTSGLDAF MAGHVVQALR 180
  181 SLADNGMTVI ITIHQPSSHV YSLFNNVCLM ACGRVIYLGP GDQAVPLFEK CGYPCPAYYN 240
  241 PADHLIRTLA VIDSDRATSM KTISKIRQGF LSTDLGQSVL AIGNANKLRA ASFVTGSDTS 300
  301 EKTKTFFNQD YNASFWTQFL ALFWRSWLTV IRDPNLLSVR LLQILITAFI TGIVFFQTPV 360
  361 TPATIISING IMFNHIRNMN FMLQFPNVPV ITAELPIVLR ENANGVYRTS AYFLAKNIAE 420
  421 LPQYIILPIL YNTIVYWMSG LYPNFWNYCF ASLVTILITN VAISISYAVA TIFANTDVAM 480
  481 TILPIFVVPI MAFGGFFITF DAIPSYFKWL SSLSYFKYGY EALAINEWDS IKVIPECFNS 540
  541 SMTAFALDSC PKNGHQVLES IDFSASHKIF DISILFGMFI GIRIIAYVAL LIRSYNNT

Type	Start	End	Confidence
Non-Cytoplasmic	1	340	0.72
Transmembrane Helix	341	373	0.69
Cytoplasmic	374	420	0.45
Transmembrane Helix	421	440	0.67
Non-Cytoplasmic	441	447	0.50
Transmembrane Helix	448	471	0.88
Cytoplasmic	472	479	0.50
Transmembrane Helix	480	503	0.87
Non-Cytoplasmic	504	568	0.63
Transmembrane Helix	569	592	0.85
Cytoplasmic	593	598	0.55