YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	glt-1
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.72
Transmembrane Helix	9	31	0.91
Non-Cytoplasmic	32	48	0.70
Transmembrane Helix	49	71	0.86
Cytoplasmic	72	82	0.65
Transmembrane Helix	83	105	0.89
Non-Cytoplasmic	106	190	0.70
Transmembrane Helix	191	212	0.87
Cytoplasmic	213	227	0.65
Transmembrane Helix	228	253	0.81
Non-Cytoplasmic	254	264	0.63
Transmembrane Helix	265	290	0.85
Cytoplasmic	291	302	0.56
Transmembrane Helix	303	324	0.81
Non-Cytoplasmic	325	352	0.57
Transmembrane Helix	353	375	0.59
Cytoplasmic	376	376	0.26
Transmembrane Helix	377	392	0.63
Non-Cytoplasmic	393	393	0.10
Transmembrane Helix	394	411	0.73
Cytoplasmic	412	492	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSWIRKNLL LVLTVSSVVL GALCGFLLRG LQLSPQNIMY ISFPGELLMH MLKMMILPLI  60
   61 MSSLISGLAQ LDARQSGKLG SLAVTYYMFT TAVAVVTGIF LVLVIHPGDP TIKKEIGTGT 120
  121 EGKTVSTVDT LLDLLRNMFP ENVVQATFQQ VQTKYIKVRP KVVKNNDSAT LAALNNGSLD 180
  181 YVKASVEYTS GMNVLGVIVF CIAIGISLSQ LGQEAHVMVQ FFVIMDKVIM KLVMTVMWYS 240
  241 PFGIFCLIMG KILEIHDLAD TARMLAMYMV TVLSGLAIHS LISLPLIFFV TTKKNPYVFM 300
  301 RGLFQAWITA LGTASSSATL PITFNCLEEN LGVDRRVTRF VLPVGATINM DGTALYEAVA 360
  361 AIFIAQINGV HLSFGQVVTV SLTATLASIG AASVPSAGLV TMLLVLTAVG LPVKDVSLIV 420
  421 AVDWLLDRIR TSINVLGDAM GAGIVYHYSK ADLDAHDRLA ATTRSHSIAM NDEKRQLAVY 480
  481 NSLPTDDEKH TH