YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	glt-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.84
Transmembrane Helix	20	42	0.93
Non-Cytoplasmic	43	59	0.80
Transmembrane Helix	60	82	0.86
Cytoplasmic	83	93	0.74
Transmembrane Helix	94	116	0.89
Non-Cytoplasmic	117	201	0.80
Transmembrane Helix	202	223	0.87
Cytoplasmic	224	242	0.69
Transmembrane Helix	243	264	0.88
Non-Cytoplasmic	265	275	0.72
Transmembrane Helix	276	301	0.86
Cytoplasmic	302	313	0.64
Transmembrane Helix	314	335	0.80
Non-Cytoplasmic	336	363	0.65
Transmembrane Helix	364	386	0.59
Cytoplasmic	387	387	0.29
Transmembrane Helix	388	405	0.65
Non-Cytoplasmic	406	406	0.13
Transmembrane Helix	407	422	0.73
Cytoplasmic	423	503	0.58

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPDTRINKE IMVSWIRKNL LLVLTVSSVV LGALCGFLLR GLQLSPQNIM YISFPGELLM  60
   61 HMLKMMILPL IMSSLISGLA QLDARQSGKL GSLAVTYYMF TTAVAVVTGI FLVLVIHPGD 120
  121 PTIKKEIGTG TEGKTVSTVD TLLDLLRNMF PENVVQATFQ QVQTKYIKVR PKVVKNNDSA 180
  181 TLAALNNGSL DYVKASVEYT SGMNVLGVIV FCIAIGISLS QLGQEAHVMV QFFVIMDKVI 240
  241 MKLVMTVMWY SPFGIFCLIM GKILEIHDLA DTARMLAMYM VTVLSGLAIH SLISLPLIFF 300
  301 VTTKKNPYVF MRGLFQAWIT ALGTASSSAT LPITFNCLEE NLGVDRRVTR FVLPVGATIN 360
  361 MDGTALYEAV AAIFIAQING VHLSFGQVVT VSLTATLASI GAASVPSAGL VTMLLVLTAV 420
  421 GLPVKDVSLI VAVDWLLDRI RTSINVLGDA MGAGIVYHYS KADLDAHDRL AATTRSHSIA 480
  481 MNDEKRQLAV YNSLPTDDEK HTH