YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	smp-1
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRILTLLLL FNVVRSSEAI TGGVVNLRPK QIINSVGIGD RFGGIGTSSD ESDHFKLLAA  60
   61 DGDSLLVGAR NAVYNLSLST LSVNHKIDWK PPAEHIEECI MKGKSKTDCQ NYIRVLARKS 120
  121 AGVSLVCGTH AFSPKCREYT VTEFGIRNTR QFDGQGISPY DPKHNSSALY VPGTNQLFVA 180
  181 TVTDFVGNDA LIYRKTIDET PSSKSAANIR TQSYDARVLN APNFVATFAY KEHVYFWFRE 240
  241 IASEAIDNNE EPQLSDLRTC RTSL

Type	Start	End	Confidence
Signal Peptide	1	19	0.93
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	264	0.99