YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ceeh-1
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFESIYIQC LNKFSKYKKF VCHTTCNCPN YKIIGYLLYF LCLCRPINCS LPLSRHDLAF  60
   61 GSFSYYLTMF LYRILVRLLQ FYYFVKFSAI LFLGFAVKGR SLFEKKQREK PNVLEGWDSR 120
  121 YIKLKKVRLH YVQTGSDDKP LMLFIHGYPE FWYSWRFQLK EFADKYRCVA IDQRGYNLSD 180
  181 KPKHVDNYSI DELTGDIRDV IEGLGYDKAI VVAHDWGGLV AWQFAEQYPE MVDKLICCNI 240
  241 PRPGSFRKRI YTSWSQFRKS WYMFFYQNEK IPEMLCSADD MKMLELCFRA KEIGIQNNKN 300
  301 FTDEDLEAWK YSFSMNGASF KYPINYYRNI FNAKKQQADL VLEMPTLIIW GTADGALDIE 360
  361 AAVDSLNTLK QGTMKKIEGA SHWVQQDEPE MVNEHIKKFL NKYQ

Type	Start	End	Confidence
Cytoplasmic	1	78	0.60
Transmembrane Helix	79	97	0.70
Non-Cytoplasmic	98	404	0.70