YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE28939
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMHMMMEMYF HFRIEEPILF REWKPLNTTA YVFSCIEIFL IAFCLEALKF GRTKLSPKVK  60
   61 IVEKKVDCCC STEKDGLWNI PETIPLTQKT VTLAPFTRDS LISKFHMASS LLVFVQHFID 120
  121 YSLMLVSMTY NWPIFLSLLA GHTTGYFFLG PMMTVEESEA AGSCCS

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.65
Transmembrane Helix	28	48	0.71
Cytoplasmic	49	101	0.83
Transmembrane Helix	102	121	0.63
Non-Cytoplasmic	122	128	0.52
Transmembrane Helix	129	150	0.79
Cytoplasmic	151	166	0.63